CheesyCS 0.8.16.0 now available. Fixes even more bugs that I may have missed, such as when you have two exact bonuses, the left or right one leads to an opponent occupied Safe Zone, using both to actually make a legal move in which you CANNOT. Remember, the Both command is only for the benefit of fast play, if the left and right values both lead to opponent occupied Safe Zone, you CANNOT use both!
I have found a program that will normalize the MIDIs so that would certainly help me out. However, I had already released Revision 6 before I took notice of your comment.